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Garrett R.H., Grisham C.M. - Biochemistry (1999)(2nd ed.)(en)

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21.4 Complex I: NADH–Coenzyme Q Reductase

681

The components of the electron transport chain can be purified from the mitochondrial inner membrane. Solubilization of the membranes containing the electron transport chain results in the isolation of four distinct protein complexes, and the complete chain can thus be considered to be composed of four parts: (I) NADH–coenzyme Q reductase, (II) succinate–coenzyme Q reductase, (III) coenzyme Q–cytochrome c reductase, and (IV) cytochrome c oxidase (Figure 21.4). Complex I accepts electrons from NADH, serving as a link between glycolysis, the TCA cycle, fatty acid oxidation, and the electron transport chain. Complex II includes succinate dehydrogenase and thus forms a direct link between the TCA cycle and electron transport. Complexes I and II produce a common product, reduced coenzyme Q (UQH2), which is the substrate for coenzyme Q–cytochrome c reductase (Complex III). As shown in Figure 21.4, there are two other ways to feed electrons to UQ: the electrontransferring flavoprotein, which transfers electrons from the flavoproteinlinked step of fatty acyl-CoA dehydrogenase, and sn-glycerophosphate dehydrogenase. Complex III oxidizes UQH2 while reducing cytochrome c, which in turn is the substrate for Complex IV, cytochrome c oxidase. Complex IV is responsible for reducing molecular oxygen. Each of the complexes shown in Figure 21.4 is a large multisubunit complex embedded within the inner mitochondrial membrane.

21.4 Complex I: NADH–Coenzyme Q Reductase

As its name implies, this complex transfers a pair of electrons from NADH to coenzyme Q, a small, hydrophobic, yellow compound. Another common name for this enzyme complex is NADH dehydrogenase. The complex (with an estimated mass of 850 kD) involves more than 30 polypeptide chains, one molecule of flavin mononucleotide (FMN), and as many as seven Fe-S clusters, together containing a total of 20 to 26 iron atoms (Table 21.2). By virtue of its dependence on FMN, NADH–UQ reductase is a flavoprotein.

Table 21.2

Protein Complexes of the Mitochondrial Electron-Transport Chain

 

Mass

 

Prosthetic

 

Complex

(kD)

Subunits

Group

Binding Site for:

 

 

 

 

 

NADH–UQ reductase

850

30

FMN

NADH (matrix side)

 

 

 

Fe-S

UQ (lipid core)

Succinate–UQ reductase

140

4

FAD

Succinate (matrix side)

 

 

 

Fe-S

UQ (lipid core)

UQ–Cyt c reductase

250

9–10

Heme bL

Cyt c (intermembrane

 

 

 

Heme bH

space side)

 

 

 

Heme c1

 

 

 

 

Fe-S

 

Cytochrome c

13

1

Heme c

Cyt c1

 

 

 

 

Cyt a

Cytochrome c oxidase

162

10

Heme a

Cyt c (intermembrane

 

 

 

Heme a3

space side)

 

 

 

CuA

 

 

 

 

CuB

 

Adapted from: Hatefi, Y., 1985. The mitochondrial electron transport chain and oxidative phosphorylation system. Annual Review of Biochemistry 54:1015–1069; and DePierre, J., and Ernster, L., 1977. Enzyme topology of intracellular membranes. Annual Review of Biochemistry 46:201–262.

FIGURE 21.5

682 Chapter 21 Electron Transport and Oxidative Phosphorylation

Although the precise mechanism of the NADH–UQ reductase is not known, the first step involves binding of NADH to the enzyme on the matrix side of the inner mitochondrial membrane, and transfer of electrons from

NADH to tightly bound FMN:

 

NADH [FMN] H 88n [FMNH2] NAD

(21.17)

The second step involves the transfer of electrons from the reduced [FMNH2] to a series of Fe-S proteins, including both 2Fe-2S and 4Fe-4S clusters (see Figures 20.8 and 20.16). The unique redox properties of the flavin group of FMN are probably important here. NADH is a two-electron donor, whereas the Fe-S proteins are one-electron transfer agents. The flavin of FMN has three redox states—the oxidized, semiquinone, and reduced states. It can act as either a one-electron or a two-electron transfer agent and may serve as a critical link between NADH and the Fe-S proteins.

The final step of the reaction involves the transfer of two electrons from iron–sulfur clusters to coenzyme Q. Coenzyme Q is a mobile electron carrier. Its isoprenoid tail makes it highly hydrophobic, and it diffuses freely in the hydrophobic core of the inner mitochondrial membrane. As a result, it shuttles electrons from Complexes I and II to Complex III. The redox cycle of UQ is shown in Figure 21.5, and the overall scheme is shown schematically in Figure 21.6.

Complex I Transports Protons from the Matrix to the Cytosol

The oxidation of one NADH and the reduction of one UQ by NADH–UQ reductase results in the net transport of protons from the matrix side to the cytosolic side of the inner membrane. The cytosolic side, where H accumulates, is referred to as the P (for positive) face; similarly, the matrix side is the N (for negative) face. Some of the energy liberated by the flow of electrons

(a)

O

 

 

 

 

 

 

 

 

 

 

 

 

 

e+ H+

O

 

 

 

e+ H+

 

 

OH

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

CH3

 

 

 

 

 

 

 

 

 

 

 

H3CO

 

 

 

 

 

 

 

 

CH3

 

 

 

CH3O

CH3

 

H3CO

 

 

 

 

 

 

 

CH3

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

H3CO

 

 

 

 

 

 

 

 

 

(CH2

 

CH

 

C

 

CH2)10

 

H

 

CH3O

R

 

H3CO

 

 

 

 

 

 

 

R

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

OH

 

 

 

 

 

 

OH

 

 

 

 

 

 

 

 

O

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Coenzyme Q, oxidized form

 

Semiquinone

 

 

 

Coenzyme Q,

 

 

 

 

 

 

 

 

 

 

(Q, ubiquinone)

 

intermediate

 

 

 

reduced form

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

(QH )

 

 

(QH2, ubiquinol)

(b)

(a) The three oxidation states of coenzyme Q.

(b) A space-filling model of coenzyme Q.

21.5 Complex II: Succinate–Coenzyme Q Reductase

683

 

2 H+

2 H+

 

 

Intermembrane

 

 

 

 

space

 

 

 

 

(P-Phase)

 

 

 

 

 

 

2

2

 

 

 

e

UQH2

UQH2

UQ

2Fe-S

e

Centers

UQ

 

 

 

 

 

2Fe-S

 

 

 

2 H+

Centers

 

HP

 

 

 

2 H+

Matrix

 

 

 

(N-Phase)

 

 

2 H+

 

2 H+

FMNH2 FMN

FP + IP

NAD+ NADH + H+

FIGURE 21.6 Proposed structure and electron transport pathway for Complex I. Three protein complexes have been isolated, including the flavoprotein (FP), iron–sulfur protein (IP), and hydrophobic protein (HP). FP contains three peptides (of mass 51, 24, and 10 kD) and bound FMN and has 2 Fe-S centers (a 2Fe-2S center and a 4Fe-4S center). IP contains six peptides and at least 3 Fe-S centers. HP contains at least seven peptides and one Fe-S center.

through this complex is used in a coupled process to drive the transport of protons across the membrane. (This is an example of active transport, a phenomenon examined in detail in Chapter 10.) Available experimental evidence suggests a stoichiometry of four H transported per two electrons passed from NADH to UQ.

21.5 Complex II: Succinate–Coenzyme Q Reductase

Complex II is perhaps better known by its other name—succinate dehydrogenase, the only TCA cycle enzyme that is an integral membrane protein in the inner mitochondrial membrane. This enzyme has a mass of approximately 100 to 140 kD and is composed of four subunits: two Fe-S proteins of masses 70 kD and 27 kD, and two other peptides of masses 15 kD and 13 kD. Also known as flavoprotein 2 (FP2), it contains an FAD covalently bound to a histidine residue (see Figure 20.15), and three Fe-S centers: a 4Fe-4S cluster, a 3Fe-4S cluster, and a 2Fe-2S cluster. When succinate is converted to fumarate in the TCA cycle, concomitant reduction of bound FAD to FADH2 occurs in succinate dehydrogenase. This FADH2 transfers its electrons immediately to Fe-S centers, which pass them on to UQ. Electron flow from succinate to UQ,

Succinate 88n fumarate 2 H 2 e

(21.18)

UQ 2 H 2 e 88n UQH2

(21.19)

FIGURE 21.7

684 Chapter 21 Electron Transport and Oxidative Phosphorylation

 

 

O

H3C

 

C

 

SCoA

 

[FAD]

 

Complex II

[FADH2]

O

H3C

 

C

 

SCoA

The fatty acyl-CoA dehydrogenase reaction, emphasizing that the reaction involves reduction of enzyme-bound FAD (indicated by brackets).

Net rxn: Succinate UQ 88n fumarate UQH2

0.029V

(21.20)

 

°

 

 

G ° 5.6 kJ mol

 

yields a net reduction potential of 0.029 V. (Note that the first half-reaction is written in the direction of the e flow. As always, o is calculated according to Equation 21.9.) The small free energy change of this reaction is not sufficient to drive the transport of protons across the inner mitochondrial membrane.

This is a crucial point because (as we will see) proton transport is coupled with ATP synthesis. Oxidation of one FADH2 in the electron transport chain results in synthesis of approximately two molecules of ATP, compared with the approximately three ATPs produced by the oxidation of one NADH. Other enzymes can also supply electrons to UQ, including mitochondrial sn-glyc- erophosphate dehydrogenase, an inner membrane–bound shuttle enzyme, and the fatty acyl–CoA dehydrogenases, three soluble matrix enzymes involved in fatty acid oxidation (Figure 21.7; also see Chapter 24). The path of electrons from succinate to UQ is shown in Figure 21.8.

Complex III

 

Complex II

Intermembrane

 

space

UQH2

 

2Fe3+

 

 

 

2 H+

UQ

2Fe2+

 

 

 

FAD

 

FADH2

 

 

 

Matrix

 

Succinate

 

Fumarate

FIGURE 21.8 A probable scheme for electron flow in Complex II. Oxidation of succinate occurs with reduction of [FAD]. Electrons are then passed to Fe-S centers and then to coenzyme Q (UQ). Proton transport does not occur in this complex.

FIGURE 21.9

21.6 Complex III: Coenzyme Q–Cytochrome c Reductase

685

21.6 Complex III: Coenzyme Q–Cytochrome c Reductase

In the third complex of the electron transport chain, reduced coenzyme Q

 

 

 

 

 

 

(UQH2) passes its electrons to cytochrome c via a unique redox pathway known

 

H3C

 

CH CH2

as the Q cycle. UQ–cytochrome c reductase (UQ–cyt c reductase), as this complex

 

 

 

 

 

 

is known, involves three different cytochromes and an Fe-S protein. In the

CH

 

 

 

 

CH3

CH2

 

 

N

 

cytochromes of these and similar complexes, the iron atom at the center of

 

 

 

 

 

the porphyrin ring cycles between the reduced Fe2 (ferrous) and oxidized

 

N

 

Fe

 

N

Fe3 (ferric) states.

 

 

 

 

 

 

 

 

 

Cytochromes were first named and classified on the basis of their absorp-

H3C

 

 

N

_

tion spectra (Figure 21.9), which depend upon the structure and environment

 

 

 

 

CH2CH2COO

 

 

 

 

 

 

of their heme groups. The b cytochromes contain iron–protoporphyrin IX (Figure

 

 

 

 

_

21.10), the same heme found in hemoglobin and myoglobin. The c

 

H3C

 

CH2CH2COO

cytochromes contain heme c, derived from iron–protoporphyrin IX by the cova-

 

Iron protoporphyrin IX

lent attachment of cysteine residues from the associated protein. UQ–cyt c

 

(found in cytochrome b,

 

myoglobin, and hemoglobin)

 

 

α

 

 

 

 

 

β

 

 

 

 

 

(a)

 

 

 

 

 

 

 

 

(a) Cytochrome c : reduced spectrum

 

 

(b)

 

 

 

 

 

α

 

 

 

 

 

 

 

 

(b) Cytochrome c : oxidized spectrum

 

 

β

 

 

 

 

 

 

 

 

(c) Cytochrome c : reduced spectrum

 

 

 

b α

 

minus oxidized spectrum

Absorbance

(c)

 

 

 

α

 

 

 

 

c

a α

 

 

 

 

 

 

 

 

 

 

a α

(d) Submitochondrial particles

 

 

(d)

b α

(room temperature): reduced spectrum

 

 

 

minus oxidized spectrum

 

 

 

 

 

 

c α

 

 

 

 

 

 

 

(e) Submitochondrial particles (77K):

 

 

 

 

 

reduced spectrum minus oxidized spectrum

(e)

450 500 550 600 650 Wavelength (nm)

Typical visible absorption spectra of cytochromes. (a) Cytochrome c, reduced spectrum; (b) cytochrome c, oxidized spectrum; (c) the difference spectrum: (a) minus (b); (d) beef heart mitochondrial particles: room temperature difference (reduced minus oxidized) spectrum; (e) beef heart submitochondrial particles: same as (d) but at 77 K. - and - bands are labeled, and in (d) and (e) the bands for cytochromes a, b and c are indicated.

 

 

S

H3C

 

CHCH3

S

 

 

CH3CH

N

CH3

N

Fe

N

H3C

N

_

 

CH2CH2COO

H3C

 

_

 

CH2CH2COO

Heme C

(found in cytochrome c)

OH

H3C

CH CH2

 

 

CH2CH

N

CH3

 

N Fe

N

H3C

N

_

 

CH2CH2COO

 

 

_

O

CH

CH2CH2COO

Heme A

(found in cytochrome a)

FIGURE 21.10 The structures of iron protoporphyrin IX, heme c, and heme a.

686 Chapter 21 Electron Transport and Oxidative Phosphorylation

FIGURE 21.11 The structure of UQ-cyt c reductase, also known as the cytochrome bc1 complex. The alpha helices of cytochrome b (pale green) define the transmembrane domain of the protein. The bottom of the

structure as shown extends approximately 75 A into the mitochondrial matrix, and the top of

the structure as shown extends about 38 A into the intermembrane space. (Photograph kindly provided by Di Xia and Johann Deisenhofer [From Xia, D., Yu, C.-A., Kim, H., Xia, J.-Z., Kachurin, A. M., Zhang, L., Yu, L., and Deisenhofer, J., 1997. The crystal structure of the cytochrome bc1 complex from bovine heart mitochondria. Science 277:60–66.])

reductase contains a b-type cytochrome, of 30 to 40 kD, with two different heme sites (Figure 21.11) and one c-type cytochrome. (One other variation, heme a, contains a 15-carbon isoprenoid chain on a modified vinyl group, and a formyl group in place of one of the methyls [see Figure 21.10]. Cytochrome a is found in two forms in Complex IV of the electron transport chain, as we shall see.) The two hemes on the b cytochrome polypeptide in UQ–cyt c reductase are distinguished by their reduction potentials and the wavelength ( max) of the socalled band (see Figure 21.9). One of these hemes, known as bL or b566, has a standard reduction potential, ° , of 0.100 V and a wavelength of maximal absorbance ( max) of 566 nm. The other, known as bH or b562, has a standard reduction potential of 0.050 V and a max of 562 nm. (H and L here refer to high and low reduction potential.)

The structure of the UQ–cyt c reductase, also known as the cytochrome bc1 complex, has been determined by Johann Deisenhofer and his colleagues. (Deisenhofer was a co-recipient of the Nobel Prize in Chemistry for his work on the structure of a photosynthetic reaction center [see Chapter 22]). The complex is a dimer, with each monomer consisting of 11 protein subunits and 2165 amino acid residues (monomer mass, 248 kD). The dimeric structure is pear-shaped and consists of a large domain that extends 75 Å into the mito-

FIGURE 21.12

21.6 Complex III: Coenzyme Q–Cytochrome c Reductase

687

chondrial matrix, a transmembrane domain consisting of 13 transmembrane-helices in each monomer and a small domain that extends 38 Å into the intermembrane space (Figure 21.11). Most of the Rieske protein (an Fe-S protein named for its discoverer) is mobile in the crystal (only 62 of 196 residues are shown in the structure in Figure 21.11), and Deisenhofer has postulated that mobility of this subunit could be required for electron transfer in the function of this complex.

Complex III Drives Proton Transport

As with Complex I, passage of electrons through the Q cycle of Complex III is accompanied by proton transport across the inner mitochondrial membrane. The postulated pathway for electrons in this system is shown in Figure 21.12. A large pool of UQ and UQH2 exists in the inner mitochondrial membrane. The Q cycle is initiated when a molecule of UQH2 from this pool diffuses to a site (called Qp) on Complex III near the cytosolic face of the membrane.

Oxidation of this UQH2 occurs in two steps. First, an electron from UQH2 is transferred to the Rieske protein and then to cytochrome c1. This releases two H to the cytosol and leaves UQ , a semiquinone anion form of UQ, at the Qp site. The second electron is then transferred to the bL heme, converting UQ to UQ. The Rieske protein and cytochrome c1 are similar in structure; each has a globular domain and is anchored to the inner membrane by

(a) First half of Q cycle

 

Qp site

2 H+

Cyt c

 

Synopsis

 

Intermembrane

 

 

2H+ out

 

 

 

 

 

 

 

 

space (P-phase)

 

 

 

 

 

 

 

 

 

 

UQH2

e

Cyt c1

First UQH2

 

Cyt c

UQH2

UQH2

UQ

FeS

 

from pool

 

 

UQ

UQ

e

 

 

 

2eoxidation

 

UQ

 

 

Cyt bL

 

1e

UQ

 

 

 

at Qp site

Pool

UQ

 

e

UQ to

 

 

 

 

 

 

 

 

 

 

 

 

 

 

1e

 

 

UQ

Cyt bH

 

pool

UQ

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Matrix (N-phase)

Qn site

 

 

 

 

at Qn site

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

(b) Second half of Q cycle

 

 

 

 

 

 

 

 

Qp site

2 H+

Cyt c

 

Synopsis

 

Intermembrane

 

 

 

2H+ out

 

 

 

 

 

 

 

 

space (P-phase)

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

UQH2

 

Cyt c1

Second UQH2

Cyt c

 

 

e

 

 

 

UQH2

UQ

FeS

 

from pool

 

 

 

e

 

 

 

UQH2

UQ

UQ

Cyt bL

 

2eoxidation

 

UQ

 

 

UQ

1e

 

 

 

at Qp site

Pool

UQH2

UQ

 

e

to pool

 

 

 

 

 

 

Cyt bH

UQH2

 

1e

 

 

UQH2

 

to pool

UQ.

 

 

 

 

 

 

 

 

 

 

 

 

 

Matrix (N-phase)

Qn site

 

 

 

 

at Qn site

 

 

 

 

 

 

 

 

 

2 H+

 

 

 

 

 

Net

 

2e

4 H+out + 2 Cyt cred + UQ

2H+

 

UQH2 + 2 H+in

+ 2 Cyt cox

 

The Q cycle in mitochondria. (a) The electron transfer pathway following oxidation of the first UQH2 at the Q p site near the cytosolic face of the membrane.

(b) The pathway following oxidation of a second UQH2.

FIGURE 21.13

688 Chapter 21 Electron Transport and Oxidative Phosphorylation

a hydrophobic segment. However, the hydrophobic segment is N-terminal in the Rieske protein and C-terminal in cytochrome c1.

The electron on the bL heme facing the cytosolic side of the membrane is now passed to the bH heme on the matrix side of the membrane. This electron transfer occurs against a membrane potential of 0.15 V and is driven by the

loss of redox potential as the electron moves from bL ( ° 0.100V) to bH

(

0.050V). The electron is then passed from bH to a molecule of UQ at

°

 

 

a second quinone-binding site, Qn, converting this UQ to UQ

. The result-

ing UQ remains firmly bound to the Qn site. This completes the first half of the Q cycle (Figure 21.12a).

The second half of the cycle (Figure 21.12b) is similar to the first half, with a second molecule of UQH2 oxidized at the Qp site, one electron being passed to cytochrome c1 and the other transferred to heme bL and then to heme bH. In this latter half of the Q cycle, however, the bH electron is transferred to the semiquinone anion, UQ , at the Qn site. With the addition of two H from the mitochondrial matrix, this produces a molecule of UQH2, which is released from the Qn site and returns to the coenzyme Q pool, completing the Q cycle.

The Q Cycle Is an Unbalanced Proton Pump

Why has nature chosen this rather convoluted path for electrons in Complex III? First of all, Complex III takes up two protons on the matrix side of the inner membrane and releases four protons on the cytoplasmic side for each pair of electrons that passes through the Q cycle. The apparent imbalance of two protons in for four protons out is offset by proton translocations in Complex IV, the cytochrome oxidase complex. The other significant feature of this mechanism is that it offers a convenient way for a two-electron carrier, UQH2, to interact with the bL and bH hemes, the Rieske protein Fe-S cluster, and cytochrome c1, all of which are one-electron carriers.

N

S

S

S N

N

C

Cytochrome c Is a Mobile Electron Carrier

Electrons traversing Complex III are passed through cytochrome c1 to cytochrome c. Cytochrome c is the only one of the cytochromes that is watersoluble. Its structure, determined by X-ray crystallography (Figure 21.13), is globular; the planar heme group lies near the center of the protein, surrounded predominantly by hydrophobic protein residues. The iron in the porphyrin ring is coordinated both to a histidine nitrogen and to the sulfur atom of a methionine residue. Coordination with ligands in this manner on both sides of the porphyrin plane precludes the binding of oxygen and other ligands, a feature that distinguishes the cytochromes from hemoglobin (Chapter 15).

Cytochrome c, like UQ, is a mobile electron carrier. It associates loosely with the inner mitochondrial membrane (in the intermembrane space on the cytosolic side of the inner membrane) to acquire electrons from the Fe-S–cyt c1 aggregate of Complex III, and then it migrates along the membrane surface in the reduced state, carrying electrons to cytochrome c oxidase, the fourth complex of the electron transport chain.

The structure of mitochondrial cytochrome c. The heme is shown at the center of the structure, covalently linked to the protein via its two sulfur atoms (yellow). A third sulfur from a methionine residue coordinates the iron.

21.7 Complex IV: Cytochrome c Oxidase

Complex IV is called cytochrome c oxidase because it accepts electrons from cytochrome c and directs them to the four-electron reduction of O2 to form H2O:

4 cyt c (Fe2 ) 4 H O2 88n 4 cyt c (Fe3 ) 2 H2O (21.21)

(Photo kindly provided by

21.7 Complex IV: Cytochrome c Oxidase

689

FIGURE 21.14 An electrophoresis gel showing the complex subunit structure of bovine heart cytochrome c oxidase. The three largest subunits, I, II, and III, are coded for by mitochondrial DNA. The others are encoded by nuclear DNA.

Professor Roderick Capaldi)

Thus, O2 and cytochrome c oxidase are the final destination for the electrons derived from the oxidation of food materials. In concert with this process, cytochrome c oxidase also drives transport of protons across the inner mitochondrial membrane. These important functions are carried out by a transmembrane protein complex consisting of more than 10 subunits (Table 21.2).

An electrophoresis gel of the bovine heart complex is shown in Figure 21.14. The total mass of the protein in the complex, composed of 13 subunits, is 204 kD. Subunits I through III, the largest ones, are encoded by mitochondrial DNA, synthesized in the mitochondrion, and inserted into the inner membrane from the matrix side. The smaller subunits are coded by nuclear DNA and synthesized in the cytosol.

The structure of cytochrome c oxidase has been solved. The essential Fe and Cu sites are contained entirely within the structures of subunits I, II, and III. None of the 10 nuclear DNA–derived subunits directly impinges on the essential metal sites. The implication is that subunits I to III actively participate in the events of electron transfer, but that the other 10 subunits play regulatory roles in this process. Subunit I is cylindrical in shape and consists of 12 transmembrane helices, without any significant extramembrane parts (Figure 21.15). Hemes a and a3, which lie perpendicular to the membrane plane, are cradled by the helices of subunit I. Subunits II and III lie on opposite sides of subunit I and do not contact each other. Subunit II has an extramembrane domain on the cytosolic face of the mitochondrial membrane. This domain consists of a 10-strand -barrel that holds CuA 7 Å from the nearest surface atom of the subunit. Subunit III consists of 7 transmembrane helices with no significant extramembrane domains. Figure 21.16 presents a molecular graphic image of cytochrome c oxidase.

 

FIGURE 21.16 Molecular graphic image of

 

cytochrome c oxidase. Seven of the 10 nuclear

 

DNA–derived subunits (IV, VIa, VIc, VIIa, VIIb,

 

VIIc, and VIII) possess transmembrane seg-

 

ments. Three (Va, Vb, and VIb) do not.

 

Subunits IV and VIc are transmembrane and

 

dumbbell-shaped. Subunit Va is globular and

 

bound to the matrix side of the complex,

 

whereas VIb is a globular subunit on the

 

cytosolic side of the membrane complex. Vb is

 

globular and matrix-side associated as well, but

 

it has an N-terminal extended domain. VIa has

 

a transmembrane helix and a small globular

 

domain. Subunit VIIa consists of a tilted trans-

 

membrane helix, with another short helical

 

segment on the matrix side of the membrane.

FIGURE 21.15 Molecular graphic image of subunits I, II, and III of cytochrome c oxi-

Subunits VIIa, VIIb, and VIII consist of trans-

membrane segments with short extended

dase.

regions outside the membrane.

FIGURE 21.18
FIGURE 21.17
Matrix (N-Phase)
2

690 Chapter 21 Electron Transport and Oxidative Phosphorylation

Cytc

2 H+

Fe

2 e

Intermembrane

 

 

 

 

space

CuA

2

e

(P-Phase)

 

 

Cyta

Fe

 

 

 

 

 

2 e

 

Cyta3

Fe

 

 

 

 

CuB

1 O + 2H+

2 2

H

O

2 H+

2

 

 

The electron transfer pathway for cytochrome oxidase. Cytochrome c binds on the cytosolic side, transferring electrons through the copper and heme centers to reduce O2 on the matrix side of the membrane.

Electron Transfer in Complex IV Involves

Two Hemes and Two Copper Sites

Cytochrome c oxidase contains two heme centers (cytochromes a and a3) as well as two copper atoms (Figure 21.17). The copper sites, CuA and CuB, are associated with cytochromes a and a3, respectively. The copper sites participate in electron transfer by cycling between the reduced (cuprous) Cu state and the oxidized (cupric) Cu2 state. (Remember, the cytochromes and copper sites are one-electron transfer agents.) Reduction of one oxygen molecule requires passage of four electrons through these carriers—one at a time (Figure 21.17).

Electrons from cytochrome c are transferred to CuA sites and then passed to the heme iron of cytochrome a. CuA is liganded by two cysteines and two histidines (Figure 21.18). The heme of cytochrome a is liganded by imidazole rings of histidine residues (Figure 21.18). The CuA and the Fe of cytochrome a are within 1.5 nm of each other.

CuB and the iron atom of cytochrome a3 are also situated close to each other and are thought to share a ligand, which may be a cysteine sulfur (Figure 21.19). This closely associated pair of metal ions is referred to as a binuclear center.

As shown in Figure 21.20, the electron pathway through Complex IV continues as CuB accepts a single electron from cytochrome a (state O n state H). A second electron then reduces the iron center to Fe2 (H n R), leading to the binding of O2 (R n A) and the formation of a peroxy bridge between heme a3 and CuB (A n P). This amounts to the transfer of two electrons from the binuclear center to the bound O2. The next step involves uptake of two H and a third electron (P n F), which leads to cleavage of the OOO bond and generation of Fe4 at the heme. Uptake of a fourth e facilitates formation of ferric hydroxide at the heme center (F n O ). In the final step of the cycle (O n O), protons from the mitochondrial matrix are accepted by the coordinated hydroxyl groups, and the resulting water molecules dissociate from the binuclear center.

Complex IV Also Transports Protons Across

the Inner Mitochondrial Membrane

The reduction of oxygen in Complex IV is accompanied by transport of protons across the inner mitochondrial membrane. Transfer of four electrons through this complex drives the transport of approximately four protons. The mechanism of proton transport is unknown but is thought to involve the steps from state P to state O (Figure 21.20). Four protons are taken up on the matrix side for every two protons transported to the cytoplasm (see Figure 21.17).

(a) The CuA site of cytochrome oxidase. Copper ligands include two histidine imidazole groups and two cysteine side chains from the protein. (b) The coordination of histidine imidazole ligands to the iron atom in the heme a center of cytochrome oxidase.

(a)

 

 

 

(b)

 

 

CH2

 

R

 

 

 

N

N

S

N N

Fe3+

N N

R

 

Cu(I)

N

N

S

R

 

CH2 R

 

The CuA site

 

 

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