FIGURE 10.25
<1 µs
10.6 ● Transport Processes Driven by Ion Gradients |
311 |
formational changes (Figure 10.25), but no deprotonation of the Schiff base occurs during the halorhodopsin photocycle. Given the striking similarity of structures for these two proteins, it is intriguing to ask why bacteriorhodopsin pumps H but not Cl and why halorhodopsin pumps Cl but not H . The first question may be answered by the work of H. G. Khorana and his coworkers, who replaced Asp85 and Asp96 in bacteriorhodopsin with asparagine and found that either substitution caused a drastic reduction in H transport. Dieter Oesterhelt and coworkers have shown that Asp85 and Asp96 are important in the deprotonation and reprotonation, respectively, of the Schiff base in bacteriorhodopsin. The absence of these two crucial residues in halorhodopsin may explain why the latter protein can’t reversibly deprotonate the Schiff base and why halorhodopsin doesn’t pump protons.
10.6 ● Transport Processes Driven by Ion Gradients
Amino Acid and Sugar Transport
The gradients of H , Na , and other cations and anions established by ATPases and other energy sources can be used for secondary active transport of various substrates. The best-understood systems use Na or H gradients to transport amino acids and sugars in certain cells. Many of these systems operate as symports, with the ion and the transported amino acid or sugar moving in the same direction (that is, into the cell). In antiport processes, the ion and the other transported species move in opposite directions. (For example, the anion transporter of erythrocytes is an antiport.) Proton symport proteins are used by E. coli and other bacteria to accumulate lactose, arabinose, ribose, and a variety of amino acids. E. coli also possesses Na -symport systems for melibiose as well as for glutamate and other amino acids.
Table 10.2 lists several systems that transport amino acids into mammalian cells. The accumulation of neutral amino acids in the liver by System A rep-
hυ |
Cl– |
all-trans |
hυ |
+ |
|
|
C = NH |
|
|
hR565 |
hR578 |
5 ps |
|
2 ms Cl– |
|
|
10 ms |
|
hR630 |
hR640 |
hR660 |
hR632 |
(77 K) |
|
|
|
300 µs
<1 µs
hR500
13-cis
● The photocycle of lightadapted halorhodopsin (hR), shown in the presence and absence of chloride. The superscripts indicate the maxima of the difference spectra between hR and the intermediates.
Table 10.2
Some Mammalian Amino Acid Transport Systems
System |
|
Amino Acids |
|
Designation |
Ion Dependence |
Transported |
Cellular Source |
|
|
|
|
A |
Na |
Neutral amino acids |
|
ASC |
Na |
Neutral amino acids |
|
L |
Na -independent |
Branched-chain and |
Ehrlich ascites cells |
|
|
aromatic amino acids |
Chinese hamster |
|
|
|
ovary cells |
|
|
|
Hepatocytes |
N |
Na |
Nitrogen-containing |
|
|
|
side chains |
|
|
|
(Gln, Asn, His, etc.) |
|
y |
Na -independent |
Cationic amino acids |
|
xAG |
Na |
Aspartate and glutamate |
Hepatocytes |
P |
Na |
Proline |
Chinese hamster |
|
|
|
ovary cells |
|
|
|
|
Adapted from: Collarini, E. J., and Oxender, D. L., 1987. Mechanisms of transport of amino acids across
membranes. Annual Review of Nutrition 7:75–90.
10.8 ● Specialized Membrane Pores |
313 |
released into the cytoplasm. (In some cases, for example the E. coli mannitol system, no Enzyme III has been identified. In these cases, the C-terminal end of the relevant Enzyme II, which resembles an Enzyme III-type sequence, substitutes for Enzyme III.)
10.8 ● Specialized Membrane Pores
Porins in Gram-Negative Bacterial Membranes
The membrane transport systems described previously (and many others like them) are relatively specific and function to transport either a single substrate or a very limited range of substrates under normal conditions. At the same time, several rather nonspecific systems also carry out transport processes. One such class of nonspecific transport proteins is found in the outer membranes of Gram-negative bacteria and mitochondria. Low-molecular-weight nutrients and certain other molecules, such as some antibiotics, cross this outer membrane, but larger molecules such as proteins cannot. The ability of the outer membrane to act as a molecular sieve is due to proteins called porins (Chapter 9). Alternatively, these molecules have been referred to as peptidoglycan-asso- ciated proteins or simply matrix proteins. General porins form nonspecific pores across the outer membrane and sort molecules according to molecular size, whereas specific porins contain binding sites for particular substrates. Porins from several organisms have been isolated and characterized (Table 10.3). Molecular masses of the porins generally range from 30 kD to 50 kD. Most (but not all) porins are arranged in the outer membrane as trimers of identical subunits. The molecular exclusion limits clearly depend on the size of the pore formed by the porin molecule. The pores formed by E. coli and S. typhimurium porins are relatively small, but porin F from Pseudomonas aeruginosa creates a much larger pore, with an exclusion limit of approximately 6 kD. Specific porins LamB and Tsx of E. coli and porins P and DI of P. aeruginosa possess specific binding sites for maltose and related oligosaccharides (Table 10.4), nucleosides, anions, and glucose, respectively.
Table 10.3
Properties of Some General Porins
Porin and Bacterial Source |
Pore Diameter (nm) |
Mr Exclusion Limit |
E. coli |
|
|
OmpF |
1.2 |
|
OmpC |
1.1 |
600 |
PhoE |
1.2 |
|
S. typhimurium |
|
|
Mr 38,000 |
1.4 |
|
Mr 39,000 |
1.4 |
700 |
Mr 40,000 |
1.4 |
|
P. aeruginosa |
|
|
F |
2.2 |
6000 |
|
|
|
Source: Adapted from Benz, R., 1984. Structure and selectivity of porin channels. Current Topics in Membrane
Transport 21:199–219; and Benz, R., 1988. Structure and function of porins from Gram-negative bacteria.
Annual Review of Microbiology 42:359–393.
FIGURE 10.28
314 Chapter 10 ● Membrane Transport
Table 10.4
Binding and Permeation Properties of the LamB
Channel for Different Sugars
Sugar |
K s (mM)* |
P (s 1)† |
|
|
|
Maltose |
10.000 |
100.0 |
Maltotriose |
0.400 |
66.0 |
Maltoheptaose |
0.067 |
2.5 |
Lactose |
56.000 |
9.0 |
Sucrose |
15.000 |
2.5 |
D-Glucose |
110.000 |
290.0 |
L-Glucose |
46.000 |
— |
D-Galactose |
42.000 |
225.0 |
D-Fructose |
600.000 |
135.0 |
D-Mannose |
160.000 |
160.0 |
Stachyose |
50.000 |
1.0 |
|
|
|
*Half-saturation constant (concentration for 50% saturation of the transport protein).
†Rate of permeation relative to that of maltose. Data adjusted to 100 s 1 for maltose. The LamB-containing liposomes were added to buffer solutions containing 40 mM of the corresponding test sugars.
Source: Adapted from Benz, R. 1988. Structure and function of porins from Gram-negative bacteria. Annual
Review of Microbiology 42:359–393.
Porins show high degrees of sequence homology and similarity. The most intriguing feature of porin secondary and tertiary structure is this: In contrast to nearly all other membrane proteins that adopt -helical structures in the transmembrane segments, porins show little or no evidence of -helical domains and segments. Instead, the porins and other outer membrane proteins adopt -sheet structures for their membrane-spanning segments. Models of membrane insertion, which involve -strands arranged perpendicular to the membrane plane, have been proposed for several porins (Figure 10.28). The crystal structure of the porin from Rhodobacter capsulatus shows a trimer in which each monomer forms a pore (Figure 10.29). The monomer pore consists of a 16-stranded -barrel that traverses the membrane as a tube. The tube is nar-
|
|
|
|
|
Asp Ser |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Gly |
Ser |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Gly |
Ala |
|
|
|
|
Thr Gly |
|
|
|
|
|
Ala |
|
|
|
Phe |
Gln |
|
|
Leu |
|
|
Ile |
|
|
|
Asn |
Ser |
Thr |
Ala |
Glu |
Thr |
Val |
Lys |
Asn Gln |
Ile |
Gly |
Gly |
Gly |
Lys Leu |
|
Asp |
Lys |
Asp |
Pro |
Asp |
Asp |
Gln |
Ser |
Pro |
Phe |
Glu |
Asp |
Asn |
Asn |
|
Ser |
Asp |
Ser |
Gln |
Phe |
Asn |
Arg |
Lys |
Glu |
Arg |
Thr |
Ala |
Ile |
Glu |
Asp |
Ile |
|
Met |
Gly |
Glu |
Gln |
Met |
Phe |
Asn |
Gln |
Asn |
Gly |
Met |
Asn |
Asp |
Asp |
Ser |
Asn |
|
Tyr |
Asp |
Ala |
Lys |
Asp |
Met |
Glu |
Asn |
Thr |
Thr |
Lys |
Lys |
Lys |
Leu |
Asp |
Asn |
|
His |
Gln |
Lys |
Thr |
Thr |
Thr |
Asn |
Gly |
Arg |
Gly |
Arg |
Thr |
Gly |
Val |
Leu |
Asp |
|
Met |
Ser |
Asn |
Arg |
Trp |
Lys |
Lys |
Asp |
Asp |
Lys |
Thr |
Gln |
Lys |
Asn |
Gln |
Asp |
|
Ala |
Tyr |
Gly |
Leu |
Ala |
Arg |
Gly |
Gly |
Ser |
Arg |
Glu |
Asn |
Ser |
Tyr |
Asn |
Ile |
|
Lys |
Ile |
Ala |
Ala |
Glu |
Ala |
Gln |
Phe |
Asn |
Ala |
Ser |
Phe |
Leu |
Ile |
Ile |
Val |
|
Val |
Arg |
Phe |
Phe |
Val |
Ser |
Tyr |
Gly |
Thr |
Glu |
Tyr |
Glu |
Val |
Asp |
Lys |
Ala |
|
Lys |
Phe |
Glu |
Ala |
Asp |
Gly |
Gln |
Thr |
Tyr |
Ala |
Phe |
Ala |
Tyr |
Val |
Tyr |
Val |
|
Gly |
Gly |
Ala |
Gly |
Tyr |
Leu |
Leu |
Ser |
Ala |
Trp |
Thr |
Val |
Gly |
Gly |
Asp |
Gly |
|
Tyr |
Phe |
Glu |
Leu |
Leu |
Ala |
Thr |
Leu |
Gly |
Ala |
Ala |
Ala |
Leu |
Ala |
Val |
Met |
|
Val |
Lys |
Trp |
Lys |
Ala |
Thr |
Leu |
Thr |
Ser |
Thr |
Leu |
Gln |
Ser |
Thr |
Phe |
Thr |
|
Asp |
Gly |
Arg |
Tyr |
Gly |
Tyr |
Asn |
Tyr |
Ile |
Gly |
Tyr |
Tyr |
Pro |
Tyr |
Ala |
Tyr |
|
Leu |
Glu |
Gly |
Lys |
Leu |
Arg |
Leu |
Asp |
Ala |
Leu |
Ile |
Gln |
Arg |
Tyr |
Ser |
Gln |
|
Lys |
Thr |
Tyr |
Asp |
Asn |
Asn |
Gly |
Phe |
Phe |
Lys |
Asn |
Phe |
Leu |
Phe |
Met |
Phe |
NH3+ |
Asn |
Gln |
Gly |
Leu |
Arg |
Thr |
Asp |
Gly |
Asp |
Tyr |
Asn |
Asp |
Gly |
Asn |
Asn |
COO– |
Gly |
Ile |
Thr |
Gly |
Gly |
Asp |
Ile |
Gly Ser |
Asp Ala |
|
Phe |
Lys |
|
Ala |
Asp |
Asn |
Leu |
Ser |
Tyr |
Phe |
Val |
|
|
|
|
|
|
|
|
|
Glu |
Lys |
Asp Gln |
Phe Asp |
Phe Gly |
|
|
|
|
|
|
|
|
|
Ile Tyr |
Asn |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
● A model for the arrangement of the porin PhoE in the outer membrane of E. coli. The transmembrane segments are strands of -sheet.
10.8 ● Specialized Membrane Pores |
317 |
FIGURE 10.32 ● The structures of (a) -endotoxin (two views) from Bacillus thuringiensis and (b) diphtheria toxin from Corynebacterium diphtheriae. Each of these toxins possesses a bundle of -helices which is presumed to form the transmembrane channel when the toxin is inserted across the host membrane. In -endotoxin, helix 5 (white) is surrounded by 6 helices (red) in a 7-helix bundle. In diphtheria toxin, three hydrophobic helices (white) lie at the center of the transmembrane domain (red).
helices surround helix 5, with their nonpolar faces apposed to helix 5 and their polar faces directed to the solvent. Membrane insertion and channel formation may involve initial insertion of helix 5, as in Figure 10.31, followed by insertion of the amphipathic helices, so that their nonpolar faces contact the bilayer lipids and their polar faces line the channel.
There are a number of other toxins for which the helical channel model is inappropriate. These include -hemolysin from Staphylococcus aureus, aerolysin from Aeromonas hydrophila, and the anthrax toxin protective antigen from Bacillus anthracis. The membrane-spanning domains of these proteins do not possess long stretches of hydrophobic residues that could form -helical transmembrane segments. They do, however, contain substantial peptide segments of alternating hydrophobic and polar residues. Like the porins, such segments can adopt -strand structures, such that one side of the -strand is hydrophobic and the other side is polar. Oligomeric association of several such segments can produce a -barrel motif, with the inside of the barrel lined with polar residues and the outside of the barrel coated with hydrophobic residues —a motif that can be accommodated readily in a bilayer membrane, creating a polar transmembrane channel.
-Hemolysin, a 33.2-kD monomer protein, forms a mushroom-shaped heptameric pore, 100 Å in length, with a diameter that ranges from 14 Å to 46 Å (Figure 10.33). In this structure, each monomer contributes two -strands 65 Å long, which are connected by a hairpin turn. The interior of the 14stranded -barrel structure is hydrophilic and the hydrophobic outer surface of the barrel is 28 Å wide. Pores formed by -hemolysin in human erythrocytes, platelets, and lymphocytes allow rapid Ca2 influx into these cells with toxic consequences.
Aeromonas hydrophila is a bacterium that causes diarrheal diseases and deep wound infections. These complications arise due to pore formation in sensitive cells by the protein toxin aerolysin. Proteolytic processing of the 52-kD precursor proaerolysin (Figure 10.34) produces the toxic form of the protein, aerolysin. Like -hemolysin, aerolysin monomers associate to form a heptameric transmembrane pore. Michael Parker and coworkers have proposed
FIGURE 10.33 ● The structure of the heptameric channel formed by -hemolysin. Each of the seven subunits contributes a -sheet hairpin to the transmembrane channel.
318 Chapter 10 ● Membrane Transport
FIGURE 10.34 ● The structure of proaerolysin, produced by Aeromonas hydrophila. Proteolysis of this precursor yields the active form, aerolysin, which is responsible for the pathogenic effects of the bacterium in deep wound infections and diarrheal diseases. Like hemolysin, aerolysin monomers associate to form heptameric membrane pores. The three-strands that contribute to the formation of the heptameric pore are shown in red. The N- terminal domain (residues 1–80, yellow) is a small lobe that protrudes from the rest of the protein.
Alamethicin I1:
that each monomer in this aggregate contributes three -strands to the -bar- rel pore. Each of these -strands (residues 277 to 287, 290 to 302, and 410 to 422) consists of alternating hydrophobic and polar residues, so that the pore once again places polar residues toward the water-filled channel and nonpolar residues facing the lipid bilayer.
Whether crossing the membrane with aggregates of amphipathic -helices or -barrels, these pore-forming toxins represent Nature’s accommodation to a structural challenge facing all protein-based transmembrane channels: the need to provide hydrogen-bonding partners for the polypeptide backbone NOH and CPO groups in an environment (the bilayer interior) that lacks hydrogen-bond donors or acceptors. The solution to this problem is found, of course, in the extensive hydrogen-bonding possibilities of -helices and-sheets.
Amphipathic Helices Form Transmembrane Ion Channels
Recently, a variety of natural peptides that form transmembrane channels have been identified and characterized. Melittin (Figure 10.35) is a bee venom toxin peptide of 26 residues. The cecropins are peptides induced in Hyalophora cecropia (Figure 10.36) and other related silkworms when challenged by bacterial infections. These peptides are thought to form -helical aggregates in mem-
Ac-Aib-Pro-Aib-Ala-Aib-Ala-Gln-Aib-Val-Aib-Gly-Leu-Aib-Pro-Val-Aib-Aib-Glu-Gln-Phol*
Cecropin A:
Lys-Trp-Lys-Leu-Phe-Lys-Lys-Ile-Glu-Lys-Val-Gly-Gln-Asn-Ile-Arg-Asp-Gly-Ile-Ile-Lys-Ala-Gly-Pro-Ala-Val-Ala-Val-Val-Gly-Gln-Ala-Thr-Gln-Ile-Ala-Lys-NH2
Melittin:
Gly-Ile-Gly-Ala-Val-Leu-Lys-Val-Leu-Thr-Thr-Gly-Leu-Pro-Ala-Leu-Ile-Ser-Trp-Ile-Lys-Arg-Lys-Arg-Gln-Gln-NH2
Magainin 2 amide:
Gly-Ile-Gly-Lys-Phe-Leu-His-Ser-Ala-Lys-Lys-Phe-Gly-Lys-Ala-Phe-Val-Gly-Glu-Ile-Met-Asn-Ser-NH2
Polar |
(Glu19) |
|
Nonpolar |
Gly |
|
|
|
|
Ser |
1 |
Phe |
23-NH2) |
8 |
12 |
Ala |
|
|
|
FIGURE 10.35 ● The amino acid sequences of several amphipathic peptide antibiotics. - Helices formed from these peptides cluster polar residues on one face of the helix, with nonpolar residues at other positions.
|
15 |
5 |
|
(Asn22)Lys |
4 |
16 Phe |
|
Lys 11 |
9 |
Ala |
|
Magainin 2 amide |
|
Gly |
18 |
2 |
Ile(Ile20) |
|
|
|
|
7 |
13 |
|
His |
Gly |
|
|
14 |
6 |
|
|
Lys |
17 |
|
|
3 |
|
|
|
10 |
|
10.8 ● Specialized Membrane Pores |
319 |
FIGURE 10.36 ● Adult (left) and caterpillar (right) stages of the cecropia moth,
Hyalophora cecropia. (left, Greg Neise/Visuals Unlimited; right, Patti Murray/Animals, Animals)
branes, creating an ion channel in the center of the aggregate. The unifying feature of these helices is their amphipathic character, with polar residues clustered on one face of the helix and nonpolar residues elsewhere. In the membrane, the polar residues face the ion channel, leaving the nonpolar residues elsewhere on the helix to interact with the hydrophobic interior of the lipid bilayer.
A D E E P E R L O O K
Melittin—How to Sting Like a Bee
The stings of many stinging insects, like wasps, hornets, and bumblebees, cause a pain that, although mild at first, increases in intensity over 2 to 30 minutes, with a following period of swelling that may last for several days. The sting of the honey bee (Apis mellifera), on the other hand, elicits a sharp, stabbing pain within 10 seconds. This pain may last for several minutes and is followed by several hours of swelling and itching. The immediate, intense pain is caused by melittin, a 26-residue peptide that constitutes about half of the 50 g (dry weight) of material injected during the “sting” (in a total volume of only 0.5 L). How does this simple peptide cause the intense pain that accompanies a bee sting?
The pain appears to arise from the formation of melittin pores in the membranes of nociceptors, free nerve endings that detect harmful (“noxious”—thus the name) stimuli of violent mechanical stress, high temperatures, and irritant chemicals. The creation of pores by melittin depends on the nociceptor membrane potential. Melittin in water solution is tetrameric. However, melittin interacting with membranes in the absence of a membrane potential is monomeric and shows no evidence of oligomer
formation. When an electrical potential (voltage) is applied across the membrane, melittin tetramers form and the membrane becomes permeable to anions such as chloride. Nociceptor membranes maintain a resting potential of 70 mV (negative inside). When melittin binds to the nociceptor membrane, the flow of chloride ions out of the cell diminishes the transmembrane potential, stimulating the nerve and triggering a pain response and also inducing melittin tetramers to dissociate. When the membrane potential is re-established, melittin tetramers reform and the cycle is repeated over and over, causing a prolonged and painful stimulation of the nociceptors. The pain of the sting eventually lessens, perhaps due to the molecules of melittin diffusing apart, so that tetramers can no longer form.
Although the honey bee’s sting is unpleasant, this tiny creature is crucial to the world’s agricultural economy. Honey bees produce more than $100 million worth of honey each year, and, more importantly, the pollination of numerous plants by honey bees is responsible for the production of $20 billion worth of crops in the United States alone.
320 Chapter 10 ● Membrane Transport
Gap Junctions in Mammalian Cell Membranes
When cells lie adjacent to each other in animal tissues, they are often connected by gap junction structures, which permit the passive flow of small molecules from one cell to the other. Such junctions essentially connect the cells metabolically, providing a means of chemical transfer and communication. In certain tissues, such as heart muscle that is not innervated, gap junctions permit very large numbers of cells to act synchronously. Gap junctions also provide a means for transport of nutrients to cells disconnected from the circulatory system, such as the lens cells of the eye.
Gap junctions are formed from hexameric arrays of a single 32-kD protein. Each subunit of the array is cylindrical, with a length of 7.5 nm and a diameter of 2.5 nm. The subunits of the hexameric array are normally tilted with respect to the sixfold axis running down the center of the hexamer (Figure 10.37). In this conformation, a central pore having a diameter of about 1.8 to 2.0 nm is created, and small molecules (up to masses of 1 kD to 1.2 kD) can pass through unimpeded. Proteins, nucleic acids, and other large structures cannot. A complete gap junction is formed from two such hexameric arrays, one from each cell. A twisting, sliding movement of the subunits narrows the channel and closes the gap junction. This closure is a cooperative process, and a localized conformation change at the cytoplasmic end assists in the closing of the channels. Because the closing of the gap junction does not appear to involve massive conformational changes in the individual subunits, the free energy change for closure is small.
Although gap junctions allow cells to communicate metabolically under normal conditions, the ability to close gap junctions provides the tissue with an important intercellular regulation mechanism. In addition, gap junctions provide a means to protect adjacent cells if one or more cells are damaged or
FIGURE 10.37 ● Gap junctions consist of hexameric arrays of cylindrical protein subunits in the plasma membrane. The subunit cylinders are tilted with respect to the axis running through the center of the gap junction. A gap junction between cells is formed when two hexameric arrays of subunits in separate cells contact each other and form a pore through which cellular contents may pass. Gap junctions close by means of a twisting, sliding motion in which the subunits decrease their tilt with respect to the central axis. Closure of the gap junction is Ca2 -dependent.